I happened upon this website, saying alpha fold is helping with protein structure, which it probably is, but it hasn’t helped with the structure of SP-D yet —  as the areas of low significance (orange and red) are completely out of line with any microscopic evidence (see AFM from Arroyo et al) which shows nice correlation with the blue areas (high probability of being correct) vs the rest of the model which has absolutely no correlation with the shape of the rest of an SP-D trimer.  Images as presented in this model (proposed models left hand part of the figure below) are the reason I continue to try to establish an accurate count of the number of peaks, their height, and width, using various imaging and signal processing programs to help define the shape along the more or less “straight” collagen-like and N term domains of an SP-D trimer.

Carbohydrate recognition domain and neck domains (BLUE) are spot on, collagen-like domain and N termini junction (orange and yellow)… really really no good.