Daily Archives: July 3, 2019

SP-D multimer (18 arms 9 N termini junctions) – how are they arranged?

SP-D multimer (18 arms 9 N termini junctions) – how are they arranged? This particular AFM image is not in good focus and the center (which may be influenced by the number of N termini involved) does not show any dark (low elevation, or low grayscale values) like some of the multimers with fewer arms. I have mapped this out in several ways and applied various grayscale processes to see whether something of the “expected” three rings (signifying the three peaks between the CRD and the N termini can be found.  Neither really fits…. but the straight across dodecamer with all N termini in a central glump does not work well at all.  Similarly to a previous image (this image is SP-D-multimer 4 in a series collected from various publications that are not mine), it is likely that the number of arms does not fit the plan of always adding a dodecamer group to a fuzzyball, at least this seems to have 18 CRD not 16 or 20.  Top left is slightly contrast enhanced, others are processed more though non has been “photoshopped” to change the data. LUT curves obtained from dodecamers are superimposed on two lower right images, and hand drawn overlay shows where a hairpin bend in a hexamer might occur while forming a SP-D fuzzyball.